Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABD30899.1Conserved hypothetical protein. (148 aa)    
Predicted Functional Partners:
ABD30898.1
Conserved hypothetical protein.
       0.725
ABD30900.1
Conserved hypothetical protein.
       0.690
ABD30901.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.689
traP
Conserved hypothetical protein; Signal transduction protein, which is a major regulator of staphylococcal pathogenesis. Phosphorylated TRAP leads to the activation of agr system and consequent RNAIII synthesis resulting in the expression of several virulence factors. Upregulates the expression of most toxins and genes known to be necessary for biofilm formation.
  
     0.642
ABD31412.1
Conserved hypothetical protein; Belongs to the Dps family.
  
  
 0.542
ABD29525.1
Conserved hypothetical protein.
  
    0.488
ABD31673.1
Conserved hypothetical protein.
  
    0.486
ABD31040.1
Sensor histidine kinase, putative.
   
    0.434
ABD31685.1
Conserved hypothetical protein.
   
    0.434
ABD30470.1
Conserved hypothetical protein.
  
     0.419
Your Current Organism:
Staphylococcus aureus
NCBI taxonomy Id: 93061
Other names: S. aureus subsp. aureus NCTC 8325, Staphylococcus aureus NCTC 8325, Staphylococcus aureus subsp. aureus NCTC 8325, Staphylococcus aureus subsp. aureus str. NCTC 8325, Staphylococcus aureus subsp. aureus strain NCTC 8325
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