Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABD31229.1Phi PVL orf 13-like protein. (317 aa)    
Predicted Functional Partners:
ABD31235.1
Phage major capsid protein, HK97 family.
 
     0.844
ABD31230.1
Phi PVL orf 12-like protein.
       0.791
ABD31231.1
Phage protein, HK97 gp10 family.
       0.791
ABD31232.1
Phage head-tail adaptor, putative.
       0.791
ABD31233.1
Conserved hypothetical phage protein.
       0.790
ABD31237.1
Phage portal protein, HK97 family.
 
     0.778
ABD31234.1
Conserved hypothetical phage protein.
       0.773
ABD31226.1
Tail length tape measure protein.
 
    0.766
ABD31236.1
Prohead protease.
 
     0.757
ABD31240.1
Phage terminase, small subunit, putative.
 
     0.757
Your Current Organism:
Staphylococcus aureus
NCBI taxonomy Id: 93061
Other names: S. aureus subsp. aureus NCTC 8325, Staphylococcus aureus NCTC 8325, Staphylococcus aureus subsp. aureus NCTC 8325, Staphylococcus aureus subsp. aureus str. NCTC 8325, Staphylococcus aureus subsp. aureus strain NCTC 8325
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