Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABD29892.1 | rsbV | SAOUHSC_00760 | SAOUHSC_02300 | Conserved hypothetical protein. | STAS domain, putative; Positive regulator of sigma-B activity. Non-phosphorylated RsbV binds to RsbW, preventing its association with sigma-B. When phosphorylated, releases RsbW, which is then free to complex with and inactivate sigma-B (By similarity); Belongs to the anti-sigma-factor antagonist family. | 0.552 |
| ABD29892.1 | rsbW | SAOUHSC_00760 | SAOUHSC_02299 | Conserved hypothetical protein. | Anti-sigma B factor, putative; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B) (By similarity). | 0.676 |
| ABD30294.1 | rsbW | SAOUHSC_01187 | SAOUHSC_02299 | Conserved hypothetical protein. | Anti-sigma B factor, putative; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B) (By similarity). | 0.787 |
| ABD30641.1 | rsbW | SAOUHSC_01560 | SAOUHSC_02299 | Conserved hypothetical phage protein. | Anti-sigma B factor, putative; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B) (By similarity). | 0.733 |
| ABD31062.1 | ABD31332.1 | SAOUHSC_02006 | SAOUHSC_02298 | Conserved hypothetical protein. | Sigma factor B, putative; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.590 |
| ABD31062.1 | ABD31335.1 | SAOUHSC_02006 | SAOUHSC_02301 | Conserved hypothetical protein. | sigmaB regulation protein RsbU, putative. | 0.409 |
| ABD31062.1 | rsbW | SAOUHSC_02006 | SAOUHSC_02299 | Conserved hypothetical protein. | Anti-sigma B factor, putative; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B) (By similarity). | 0.623 |
| ABD31332.1 | ABD31062.1 | SAOUHSC_02298 | SAOUHSC_02006 | Sigma factor B, putative; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Conserved hypothetical protein. | 0.590 |
| ABD31332.1 | ABD31335.1 | SAOUHSC_02298 | SAOUHSC_02301 | Sigma factor B, putative; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | sigmaB regulation protein RsbU, putative. | 0.918 |
| ABD31332.1 | ABD31336.1 | SAOUHSC_02298 | SAOUHSC_02302 | Sigma factor B, putative; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | sigmaB regulation protein RsbU, putative. | 0.802 |
| ABD31332.1 | mazE | SAOUHSC_02298 | SAOUHSC_02304 | Sigma factor B, putative; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system. Labile antitoxin that binds to cognate MazF toxin and counteracts its endoribonuclease activity; Belongs to the MazE/EndoAI family. | 0.835 |
| ABD31332.1 | mazF | SAOUHSC_02298 | SAOUHSC_02303 | Sigma factor B, putative; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Conserved hypothetical protein; Toxic component of a type II toxin-antitoxin (TA) system. Ribosome-independent, sequence-specific endoribonuclease that cleaves mRNA, thus inhibiting protein synthesis and inducing bacterial stasis. It cuts between the first and nucleotides of 5'-UACAU-3' in single- stranded RNA. Neutralized by coexpression with cognate antitoxin MazE. Belongs to the PemK/MazF family. | 0.654 |
| ABD31332.1 | rsbV | SAOUHSC_02298 | SAOUHSC_02300 | Sigma factor B, putative; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | STAS domain, putative; Positive regulator of sigma-B activity. Non-phosphorylated RsbV binds to RsbW, preventing its association with sigma-B. When phosphorylated, releases RsbW, which is then free to complex with and inactivate sigma-B (By similarity); Belongs to the anti-sigma-factor antagonist family. | 0.998 |
| ABD31332.1 | rsbW | SAOUHSC_02298 | SAOUHSC_02299 | Sigma factor B, putative; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Anti-sigma B factor, putative; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B) (By similarity). | 0.999 |
| ABD31335.1 | ABD31062.1 | SAOUHSC_02301 | SAOUHSC_02006 | sigmaB regulation protein RsbU, putative. | Conserved hypothetical protein. | 0.409 |
| ABD31335.1 | ABD31332.1 | SAOUHSC_02301 | SAOUHSC_02298 | sigmaB regulation protein RsbU, putative. | Sigma factor B, putative; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.918 |
| ABD31335.1 | ABD31336.1 | SAOUHSC_02301 | SAOUHSC_02302 | sigmaB regulation protein RsbU, putative. | sigmaB regulation protein RsbU, putative. | 0.923 |
| ABD31335.1 | rsbV | SAOUHSC_02301 | SAOUHSC_02300 | sigmaB regulation protein RsbU, putative. | STAS domain, putative; Positive regulator of sigma-B activity. Non-phosphorylated RsbV binds to RsbW, preventing its association with sigma-B. When phosphorylated, releases RsbW, which is then free to complex with and inactivate sigma-B (By similarity); Belongs to the anti-sigma-factor antagonist family. | 0.984 |
| ABD31335.1 | rsbW | SAOUHSC_02301 | SAOUHSC_02299 | sigmaB regulation protein RsbU, putative. | Anti-sigma B factor, putative; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B) (By similarity). | 0.977 |
| ABD31336.1 | ABD31332.1 | SAOUHSC_02302 | SAOUHSC_02298 | sigmaB regulation protein RsbU, putative. | Sigma factor B, putative; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.802 |
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