Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplM | rplQ | SAOUHSC_02478 | SAOUHSC_02484 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L17. | 0.999 |
| rplM | rplU | SAOUHSC_02478 | SAOUHSC_01757 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
| rplM | rpmF | SAOUHSC_02478 | SAOUHSC_01078 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
| rplM | rpmI | SAOUHSC_02478 | SAOUHSC_01785 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
| rplM | rpmJ | SAOUHSC_02478 | SAOUHSC_02488 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.999 |
| rplM | rpsF | SAOUHSC_02478 | SAOUHSC_00348 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rplM | rpsG | SAOUHSC_02478 | SAOUHSC_00528 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| rplM | rpsK | SAOUHSC_02478 | SAOUHSC_02486 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S11, putative; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
| rplM | rpsL | SAOUHSC_02478 | SAOUHSC_00527 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
| rplM | rpsP | SAOUHSC_02478 | SAOUHSC_01208 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
| rplQ | rplM | SAOUHSC_02484 | SAOUHSC_02478 | Ribosomal protein L17. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplQ | rplU | SAOUHSC_02484 | SAOUHSC_01757 | Ribosomal protein L17. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
| rplQ | rpmF | SAOUHSC_02484 | SAOUHSC_01078 | Ribosomal protein L17. | Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
| rplQ | rpmI | SAOUHSC_02484 | SAOUHSC_01785 | Ribosomal protein L17. | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.998 |
| rplQ | rpmJ | SAOUHSC_02484 | SAOUHSC_02488 | Ribosomal protein L17. | Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.999 |
| rplQ | rpsF | SAOUHSC_02484 | SAOUHSC_00348 | Ribosomal protein L17. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rplQ | rpsG | SAOUHSC_02484 | SAOUHSC_00528 | Ribosomal protein L17. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| rplQ | rpsK | SAOUHSC_02484 | SAOUHSC_02486 | Ribosomal protein L17. | Ribosomal protein S11, putative; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
| rplQ | rpsL | SAOUHSC_02484 | SAOUHSC_00527 | Ribosomal protein L17. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
| rplQ | rpsP | SAOUHSC_02484 | SAOUHSC_01208 | Ribosomal protein L17. | Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
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