STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001953075_00906Unannotated protein. (482 aa)    
Predicted Functional Partners:
GCA_001953075_00907
Unannotated protein.
  
 0.994
GCA_001953075_00908
Unannotated protein.
 
     0.865
GCA_001953075_00911
Unannotated protein.
 
  
 0.854
GCA_001953075_03106
Unannotated protein.
 
  
 0.809
GCA_001953075_00910
Unannotated protein.
 
  
0.744
GCA_001953075_02913
Unannotated protein.
    
  0.438
GCA_001953075_00905
Unannotated protein.
       0.424
GCA_001953075_02843
Unannotated protein.
    
  0.403
Your Current Organism:
Halioglobus pacificus
NCBI taxonomy Id: 930806
Other names: H. pacificus, Halioglobus pacificus Park et al. 2012, KCTC 23430, NBRC 107742, gamma proteobacterium S1-72, strain S1-72
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.