STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001953075_01861Unannotated protein. (105 aa)    
Predicted Functional Partners:
GCA_001953075_01862
Unannotated protein.
 
    0.888
GCA_001953075_02498
Unannotated protein.
   
 
 0.798
GCA_001953075_04059
Unannotated protein.
  
    0.787
GCA_001953075_01863
Unannotated protein.
  
  
 0.713
GCA_001953075_01864
Unannotated protein.
 
   
 0.703
GCA_001953075_03205
Unannotated protein.
  
     0.678
GCA_001953075_00275
Unannotated protein.
  
   
 0.677
GCA_001953075_03214
Unannotated protein.
  
  
 0.657
GCA_001953075_00270
Unannotated protein.
  
     0.625
GCA_001953075_01829
Unannotated protein.
  
     0.622
Your Current Organism:
Halioglobus pacificus
NCBI taxonomy Id: 930806
Other names: H. pacificus, Halioglobus pacificus Park et al. 2012, KCTC 23430, NBRC 107742, gamma proteobacterium S1-72, strain S1-72
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.