A0A067M5U8 protein (Botryobasidium botryosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A067M5U8

HMG box domain-containing protein. (187 aa)

Predicted Functional Partners:

A0A067M9H9

0.697

A0A067MUX2

0.615

A0A067MXI4

0.615

A0A067N8G1

0.615

A0A067M2D0

0.609

A0A067LT40

0.608

A0A067MEZ7

0.608

A0A067MHS2

0.608

A0A067MJ87

0.585

A0A067MCX3

0.566

Your Current Organism:

Botryobasidium botryosum

NCBI taxonomy Id: 930990
Other names: B. botryosum FD-172 SS1, Botryobasidium botryosum FD-172 SS1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A067LT40	A0A067M5U8	Uncharacterized protein.	HMG box domain-containing protein.	0.608
A0A067LT40	A0A067M9H9	Uncharacterized protein.	Homeobox domain-containing protein.	0.445
A0A067LT40	A0A067MEZ7	Uncharacterized protein.	Uncharacterized protein.	0.815
A0A067LT40	A0A067MHS2	Uncharacterized protein.	Uridine kinase; Belongs to the uridine kinase family.	0.785
A0A067LT40	A0A067MUX2	Uncharacterized protein.	Uncharacterized protein.	0.867
A0A067LT40	A0A067MXI4	Uncharacterized protein.	Uncharacterized protein.	0.867
A0A067LT40	A0A067N8G1	Uncharacterized protein.	Uncharacterized protein.	0.867
A0A067M2D0	A0A067M5U8	Protein disulfide-isomerase.	HMG box domain-containing protein.	0.609
A0A067M5U8	A0A067LT40	HMG box domain-containing protein.	Uncharacterized protein.	0.608
A0A067M5U8	A0A067M2D0	HMG box domain-containing protein.	Protein disulfide-isomerase.	0.609
A0A067M5U8	A0A067M9H9	HMG box domain-containing protein.	Homeobox domain-containing protein.	0.697
A0A067M5U8	A0A067MCX3	HMG box domain-containing protein.	Autophagy-related protein; Vacuolar effluxer which mediate the efflux of amino acids resulting from autophagic degradation. The release of autophagic amino acids allows the maintenance of protein synthesis and viability during nitrogen starvation; Belongs to the ATG22 family.	0.566
A0A067M5U8	A0A067MEZ7	HMG box domain-containing protein.	Uncharacterized protein.	0.608
A0A067M5U8	A0A067MHS2	HMG box domain-containing protein.	Uridine kinase; Belongs to the uridine kinase family.	0.608
A0A067M5U8	A0A067MJ87	HMG box domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.585
A0A067M5U8	A0A067MUX2	HMG box domain-containing protein.	Uncharacterized protein.	0.615
A0A067M5U8	A0A067MXI4	HMG box domain-containing protein.	Uncharacterized protein.	0.615
A0A067M5U8	A0A067N8G1	HMG box domain-containing protein.	Uncharacterized protein.	0.615
A0A067M9H9	A0A067LT40	Homeobox domain-containing protein.	Uncharacterized protein.	0.445
A0A067M9H9	A0A067M5U8	Homeobox domain-containing protein.	HMG box domain-containing protein.	0.697