STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0C171Unplaced genomic scaffold scaffold_2386, whole genome shotgun sequence. (676 aa)    
Predicted Functional Partners:
A0A0D0DWE8
Unplaced genomic scaffold scaffold_31, whole genome shotgun sequence; Belongs to the WD repeat SEC13 family.
   
 0.991
A0A0D0DXG7
Unplaced genomic scaffold scaffold_16, whole genome shotgun sequence.
   
 0.987
A0A0D0E973
Nuclear pore protein.
   
 0.986
A0A0D0EBL9
Unplaced genomic scaffold scaffold_96, whole genome shotgun sequence.
   
 0.980
A0A0D0EC34
Unplaced genomic scaffold scaffold_62, whole genome shotgun sequence.
     
 0.976
A0A0D0E624
Unplaced genomic scaffold scaffold_140, whole genome shotgun sequence.
   
 0.968
A0A0D0E116
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.966
A0A0D0E5T7
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.958
A0A0D0EAZ4
Unplaced genomic scaffold scaffold_137, whole genome shotgun sequence.
   
 0.943
A0A0D0DJX1
Unplaced genomic scaffold scaffold_881, whole genome shotgun sequence.
    
 0.941
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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