A0A0D0CQR5 protein (Paxillus rubicundulus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D0CQR5

Unplaced genomic scaffold scaffold_2042, whole genome shotgun sequence. (315 aa)

Predicted Functional Partners:

A0A0D0D3X9

0.952

A0A0D0E991

0.885

A0A0D0D753

0.872

A0A0D0E959

0.842

A0A0D0EC72

0.842

A0A0D0DJQ1

0.785

A0A0D0E756

0.785

A0A0D0D0H7

0.783

A0A0D0E0W8

0.776

A0A0D0D4A3

0.759

Your Current Organism:

Paxillus rubicundulus

NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D0CQR5	A0A0D0D0H7	Unplaced genomic scaffold scaffold_2042, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_976, whole genome shotgun sequence.	0.783
A0A0D0CQR5	A0A0D0D3X9	Unplaced genomic scaffold scaffold_2042, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_3825, whole genome shotgun sequence; Belongs to the thiolase-like superfamily. Thiolase family.	0.952
A0A0D0CQR5	A0A0D0D4A3	Unplaced genomic scaffold scaffold_2042, whole genome shotgun sequence.	Acetolactate synthase.	0.759
A0A0D0CQR5	A0A0D0D753	Unplaced genomic scaffold scaffold_2042, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_426, whole genome shotgun sequence.	0.872
A0A0D0CQR5	A0A0D0DJQ1	Unplaced genomic scaffold scaffold_2042, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_574, whole genome shotgun sequence.	0.785
A0A0D0CQR5	A0A0D0E0W8	Unplaced genomic scaffold scaffold_2042, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_347, whole genome shotgun sequence.	0.776
A0A0D0CQR5	A0A0D0E756	Unplaced genomic scaffold scaffold_2042, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_340, whole genome shotgun sequence.	0.785
A0A0D0CQR5	A0A0D0E959	Unplaced genomic scaffold scaffold_2042, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_220, whole genome shotgun sequence.	0.842
A0A0D0CQR5	A0A0D0E991	Unplaced genomic scaffold scaffold_2042, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_213, whole genome shotgun sequence.	0.885
A0A0D0CQR5	A0A0D0EC72	Unplaced genomic scaffold scaffold_2042, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_55, whole genome shotgun sequence.	0.842
A0A0D0D0H7	A0A0D0CQR5	Unplaced genomic scaffold scaffold_976, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_2042, whole genome shotgun sequence.	0.783
A0A0D0D0H7	A0A0D0D753	Unplaced genomic scaffold scaffold_976, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_426, whole genome shotgun sequence.	0.768
A0A0D0D0H7	A0A0D0E991	Unplaced genomic scaffold scaffold_976, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_213, whole genome shotgun sequence.	0.830
A0A0D0D3X9	A0A0D0CQR5	Unplaced genomic scaffold scaffold_3825, whole genome shotgun sequence; Belongs to the thiolase-like superfamily. Thiolase family.	Unplaced genomic scaffold scaffold_2042, whole genome shotgun sequence.	0.952
A0A0D0D3X9	A0A0D0D4A3	Unplaced genomic scaffold scaffold_3825, whole genome shotgun sequence; Belongs to the thiolase-like superfamily. Thiolase family.	Acetolactate synthase.	0.793
A0A0D0D3X9	A0A0D0D753	Unplaced genomic scaffold scaffold_3825, whole genome shotgun sequence; Belongs to the thiolase-like superfamily. Thiolase family.	Unplaced genomic scaffold scaffold_426, whole genome shotgun sequence.	0.557
A0A0D0D3X9	A0A0D0DJQ1	Unplaced genomic scaffold scaffold_3825, whole genome shotgun sequence; Belongs to the thiolase-like superfamily. Thiolase family.	Unplaced genomic scaffold scaffold_574, whole genome shotgun sequence.	0.999
A0A0D0D3X9	A0A0D0E0W8	Unplaced genomic scaffold scaffold_3825, whole genome shotgun sequence; Belongs to the thiolase-like superfamily. Thiolase family.	Unplaced genomic scaffold scaffold_347, whole genome shotgun sequence.	0.822
A0A0D0D3X9	A0A0D0E756	Unplaced genomic scaffold scaffold_3825, whole genome shotgun sequence; Belongs to the thiolase-like superfamily. Thiolase family.	Unplaced genomic scaffold scaffold_340, whole genome shotgun sequence.	0.999
A0A0D0D3X9	A0A0D0E959	Unplaced genomic scaffold scaffold_3825, whole genome shotgun sequence; Belongs to the thiolase-like superfamily. Thiolase family.	Unplaced genomic scaffold scaffold_220, whole genome shotgun sequence.	0.964