A0A0D0CT82 protein (Paxillus rubicundulus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D0CT82

Unplaced genomic scaffold scaffold_734, whole genome shotgun sequence. (218 aa)

Predicted Functional Partners:

A0A0D0E8M5

0.954

A0A0D0DY56

0.919

A0A0D0DRC0

0.915

A0A0D0C7V1

0.845

A0A0D0EDB3

0.845

A0A0D0E0Z1

0.830

A0A0D0E4X4

0.822

A0A0D0E4W1

0.798

A0A0D0D222

0.767

A0A0D0EAC4

0.767

Your Current Organism:

Paxillus rubicundulus

NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D0C7V1	A0A0D0CT82	Unplaced genomic scaffold scaffold_1581, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_734, whole genome shotgun sequence.	0.845
A0A0D0C7V1	A0A0D0D222	Unplaced genomic scaffold scaffold_1581, whole genome shotgun sequence.	Glucoamylase.	0.942
A0A0D0C7V1	A0A0D0DY56	Unplaced genomic scaffold scaffold_1581, whole genome shotgun sequence.	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.	0.990
A0A0D0C7V1	A0A0D0E0Z1	Unplaced genomic scaffold scaffold_1581, whole genome shotgun sequence.	Glyceraldehyde-3-phosphate dehydrogenase.	0.982
A0A0D0C7V1	A0A0D0E4W1	Unplaced genomic scaffold scaffold_1581, whole genome shotgun sequence.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.959
A0A0D0C7V1	A0A0D0E4X4	Unplaced genomic scaffold scaffold_1581, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_35, whole genome shotgun sequence.	0.956
A0A0D0C7V1	A0A0D0E8M5	Unplaced genomic scaffold scaffold_1581, whole genome shotgun sequence.	Triosephosphate isomerase.	0.989
A0A0D0C7V1	A0A0D0EAC4	Unplaced genomic scaffold scaffold_1581, whole genome shotgun sequence.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.942
A0A0D0CT82	A0A0D0C7V1	Unplaced genomic scaffold scaffold_734, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_1581, whole genome shotgun sequence.	0.845
A0A0D0CT82	A0A0D0D222	Unplaced genomic scaffold scaffold_734, whole genome shotgun sequence.	Glucoamylase.	0.767
A0A0D0CT82	A0A0D0DRC0	Unplaced genomic scaffold scaffold_734, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_837, whole genome shotgun sequence.	0.915
A0A0D0CT82	A0A0D0DY56	Unplaced genomic scaffold scaffold_734, whole genome shotgun sequence.	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.	0.919
A0A0D0CT82	A0A0D0E0Z1	Unplaced genomic scaffold scaffold_734, whole genome shotgun sequence.	Glyceraldehyde-3-phosphate dehydrogenase.	0.830
A0A0D0CT82	A0A0D0E4W1	Unplaced genomic scaffold scaffold_734, whole genome shotgun sequence.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.798
A0A0D0CT82	A0A0D0E4X4	Unplaced genomic scaffold scaffold_734, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_35, whole genome shotgun sequence.	0.822
A0A0D0CT82	A0A0D0E8M5	Unplaced genomic scaffold scaffold_734, whole genome shotgun sequence.	Triosephosphate isomerase.	0.954
A0A0D0CT82	A0A0D0EAC4	Unplaced genomic scaffold scaffold_734, whole genome shotgun sequence.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.767
A0A0D0CT82	A0A0D0EDB3	Unplaced genomic scaffold scaffold_734, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_4, whole genome shotgun sequence.	0.845
A0A0D0D222	A0A0D0C7V1	Glucoamylase.	Unplaced genomic scaffold scaffold_1581, whole genome shotgun sequence.	0.942
A0A0D0D222	A0A0D0CT82	Glucoamylase.	Unplaced genomic scaffold scaffold_734, whole genome shotgun sequence.	0.767