STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0D1L6Unplaced genomic scaffold scaffold_2164, whole genome shotgun sequence. (153 aa)    
Predicted Functional Partners:
A0A0D0DR55
Unplaced genomic scaffold scaffold_227, whole genome shotgun sequence.
    
 0.614
A0A0D0E2F2
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.605
A0A0D0CVB6
Unplaced genomic scaffold scaffold_1472, whole genome shotgun sequence.
    
  0.594
A0A0D0DFQ7
Unplaced genomic scaffold scaffold_156, whole genome shotgun sequence.
    
  0.594
A0A0D0DXQ6
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.594
A0A0D0E6M2
Unplaced genomic scaffold scaffold_6, whole genome shotgun sequence.
    
  0.566
A0A0D0DS27
Unplaced genomic scaffold scaffold_185, whole genome shotgun sequence.
    
  0.548
A0A0D0DDX3
Unplaced genomic scaffold scaffold_212, whole genome shotgun sequence.
    
  0.515
A0A0D0DXF3
Unplaced genomic scaffold scaffold_620, whole genome shotgun sequence.
    
  0.514
A0A0D0DGB2
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
  0.500
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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