A0A0D0D1Y7 protein (Paxillus rubicundulus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D0D1Y7

Unplaced genomic scaffold scaffold_688, whole genome shotgun sequence. (267 aa)

Predicted Functional Partners:

A0A0D0DC06

0.877

A0A0D0DJP6

0.877

A0A0D0DU47

0.828

A0A0D0DWF4

0.809

A0A0D0DS52

0.803

A0A0D0D3H6

0.800

A0A0D0E5N8

0.799

A0A0D0DUW0

0.783

A0A0D0E7G2

0.773

A0A0D0D3G7

0.772

Your Current Organism:

Paxillus rubicundulus

NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D0D1Y7	A0A0D0D3G7	Unplaced genomic scaffold scaffold_688, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_619, whole genome shotgun sequence.	0.772
A0A0D0D1Y7	A0A0D0D3H6	Unplaced genomic scaffold scaffold_688, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	0.800
A0A0D0D1Y7	A0A0D0DC06	Unplaced genomic scaffold scaffold_688, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_932, whole genome shotgun sequence.	0.877
A0A0D0D1Y7	A0A0D0DJP6	Unplaced genomic scaffold scaffold_688, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_575, whole genome shotgun sequence.	0.877
A0A0D0D1Y7	A0A0D0DS52	Unplaced genomic scaffold scaffold_688, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_181, whole genome shotgun sequence.	0.803
A0A0D0D1Y7	A0A0D0DU47	Unplaced genomic scaffold scaffold_688, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_102, whole genome shotgun sequence.	0.828
A0A0D0D1Y7	A0A0D0DUW0	Unplaced genomic scaffold scaffold_688, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_400, whole genome shotgun sequence; Belongs to the complex I LYR family.	0.783
A0A0D0D1Y7	A0A0D0DWF4	Unplaced genomic scaffold scaffold_688, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_30, whole genome shotgun sequence.	0.809
A0A0D0D1Y7	A0A0D0E5N8	Unplaced genomic scaffold scaffold_688, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_21, whole genome shotgun sequence.	0.799
A0A0D0D1Y7	A0A0D0E7G2	Unplaced genomic scaffold scaffold_688, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_102, whole genome shotgun sequence.	0.773
A0A0D0D3G7	A0A0D0D1Y7	Unplaced genomic scaffold scaffold_619, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_688, whole genome shotgun sequence.	0.772
A0A0D0D3G7	A0A0D0D3H6	Unplaced genomic scaffold scaffold_619, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	0.994
A0A0D0D3G7	A0A0D0DC06	Unplaced genomic scaffold scaffold_619, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_932, whole genome shotgun sequence.	0.913
A0A0D0D3G7	A0A0D0DJP6	Unplaced genomic scaffold scaffold_619, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_575, whole genome shotgun sequence.	0.913
A0A0D0D3G7	A0A0D0DS52	Unplaced genomic scaffold scaffold_619, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_181, whole genome shotgun sequence.	0.992
A0A0D0D3G7	A0A0D0DU47	Unplaced genomic scaffold scaffold_619, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_102, whole genome shotgun sequence.	0.993
A0A0D0D3G7	A0A0D0DWF4	Unplaced genomic scaffold scaffold_619, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_30, whole genome shotgun sequence.	0.699
A0A0D0D3G7	A0A0D0E5N8	Unplaced genomic scaffold scaffold_619, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_21, whole genome shotgun sequence.	0.961
A0A0D0D3G7	A0A0D0E7G2	Unplaced genomic scaffold scaffold_619, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_102, whole genome shotgun sequence.	0.963
A0A0D0D3H6	A0A0D0D1Y7	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	Unplaced genomic scaffold scaffold_688, whole genome shotgun sequence.	0.800