A0A0D0D5Q3 protein (Paxillus rubicundulus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D0D5Q3

Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence. (571 aa)

Predicted Functional Partners:

A0A0D0DU40

0.996

A0A0D0DU12

0.942

A0A0D0E497

0.940

A0A0D0DR37

0.935

A0A0D0D6A2

0.934

A0A0D0DRH5

0.914

LSM1

0.910

LSM3

0.905

A0A0D0D6D6

0.883

A0A0D0DRR7

0.877

Your Current Organism:

Paxillus rubicundulus

NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D0D5Q3	A0A0D0D6A2	A0A0D0D5Q3	A0A0D0D6A2	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_469, whole genome shotgun sequence.	0.934
A0A0D0D5Q3	A0A0D0D6D6	A0A0D0D5Q3	A0A0D0D6D6	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_466, whole genome shotgun sequence.	0.883
A0A0D0D5Q3	A0A0D0DR37	A0A0D0D5Q3	A0A0D0DR37	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_874, whole genome shotgun sequence.	0.935
A0A0D0D5Q3	A0A0D0DRH5	A0A0D0D5Q3	A0A0D0DRH5	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_209, whole genome shotgun sequence.	0.914
A0A0D0D5Q3	A0A0D0DRR7	A0A0D0D5Q3	A0A0D0DRR7	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_681, whole genome shotgun sequence.	0.877
A0A0D0D5Q3	A0A0D0DU12	A0A0D0D5Q3	A0A0D0DU12	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_106, whole genome shotgun sequence.	0.942
A0A0D0D5Q3	A0A0D0DU40	A0A0D0D5Q3	A0A0D0DU40	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_466, whole genome shotgun sequence.	0.996
A0A0D0D5Q3	A0A0D0E497	A0A0D0D5Q3	A0A0D0E497	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	0.940
A0A0D0D5Q3	LSM1	A0A0D0D5Q3	A0A0D0DCA2	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.910
A0A0D0D5Q3	LSM3	A0A0D0D5Q3	A0A0D0E5P6	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.905
A0A0D0D6A2	A0A0D0D5Q3	A0A0D0D6A2	A0A0D0D5Q3	Unplaced genomic scaffold scaffold_469, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	0.934
A0A0D0D6A2	A0A0D0DR37	A0A0D0D6A2	A0A0D0DR37	Unplaced genomic scaffold scaffold_469, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_874, whole genome shotgun sequence.	0.931
A0A0D0D6A2	A0A0D0DRH5	A0A0D0D6A2	A0A0D0DRH5	Unplaced genomic scaffold scaffold_469, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_209, whole genome shotgun sequence.	0.788
A0A0D0D6A2	A0A0D0DRR7	A0A0D0D6A2	A0A0D0DRR7	Unplaced genomic scaffold scaffold_469, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_681, whole genome shotgun sequence.	0.788
A0A0D0D6A2	A0A0D0DU12	A0A0D0D6A2	A0A0D0DU12	Unplaced genomic scaffold scaffold_469, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_106, whole genome shotgun sequence.	0.999
A0A0D0D6A2	A0A0D0DU40	A0A0D0D6A2	A0A0D0DU40	Unplaced genomic scaffold scaffold_469, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_466, whole genome shotgun sequence.	0.407
A0A0D0D6A2	A0A0D0E497	A0A0D0D6A2	A0A0D0E497	Unplaced genomic scaffold scaffold_469, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	0.934
A0A0D0D6A2	LSM1	A0A0D0D6A2	A0A0D0DCA2	Unplaced genomic scaffold scaffold_469, whole genome shotgun sequence.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.961
A0A0D0D6A2	LSM3	A0A0D0D6A2	A0A0D0E5P6	Unplaced genomic scaffold scaffold_469, whole genome shotgun sequence.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.945
A0A0D0D6D6	A0A0D0D5Q3	A0A0D0D6D6	A0A0D0D5Q3	Unplaced genomic scaffold scaffold_466, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_501, whole genome shotgun sequence.	0.883