STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0D9H4Unplaced genomic scaffold scaffold_341, whole genome shotgun sequence. (955 aa)    
Predicted Functional Partners:
A0A0D0D1C5
U3 small nucleolar RNA-associated protein 22.
   
 0.999
A0A0D0DTC6
Unplaced genomic scaffold scaffold_527, whole genome shotgun sequence.
   
 0.999
A0A0D0DZ09
Unplaced genomic scaffold scaffold_211, whole genome shotgun sequence.
   
 0.999
A0A0D0E1G8
Unplaced genomic scaffold scaffold_104, whole genome shotgun sequence.
   
 0.999
A0A0D0E3A7
Unplaced genomic scaffold scaffold_63, whole genome shotgun sequence.
   
 0.999
A0A0D0E960
Unplaced genomic scaffold scaffold_45, whole genome shotgun sequence.
   
 0.999
A0A0D0E9A9
Unplaced genomic scaffold scaffold_43, whole genome shotgun sequence.
   
0.999
A0A0D0E9J2
Unplaced genomic scaffold scaffold_37, whole genome shotgun sequence.
   
 0.999
A0A0D0E9J9
Unplaced genomic scaffold scaffold_36, whole genome shotgun sequence.
   
 0.999
A0A0D0EAE3
Unplaced genomic scaffold scaffold_15, whole genome shotgun sequence.
   
 0.999
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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