A0A0D0DH66 protein (Paxillus rubicundulus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D0DH66

Unplaced genomic scaffold scaffold_2209, whole genome shotgun sequence. (315 aa)

Predicted Functional Partners:

A0A0D0CPW8

0.950

A0A0D0E8D3

0.701

A0A0D0E7J4

0.695

A0A0D0E2Y2

0.677

A0A0D0CHY2

0.655

A0A0D0DKT0

0.655

A0A0D0E8I1

0.655

A0A0D0DAB0

0.643

A0A0D0DE99

0.631

A0A0D0DBR5

0.624

Your Current Organism:

Paxillus rubicundulus

NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D0CHY2	A0A0D0CPW8	Unplaced genomic scaffold scaffold_820, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_5536, whole genome shotgun sequence.	0.645
A0A0D0CHY2	A0A0D0DBR5	Unplaced genomic scaffold scaffold_820, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_272, whole genome shotgun sequence.	0.715
A0A0D0CHY2	A0A0D0DE99	Unplaced genomic scaffold scaffold_820, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_199, whole genome shotgun sequence.	0.710
A0A0D0CHY2	A0A0D0DH66	Unplaced genomic scaffold scaffold_820, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_2209, whole genome shotgun sequence.	0.655
A0A0D0CHY2	A0A0D0E2Y2	Unplaced genomic scaffold scaffold_820, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_240, whole genome shotgun sequence.	0.854
A0A0D0CHY2	A0A0D0E7J4	Unplaced genomic scaffold scaffold_820, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_310, whole genome shotgun sequence.	0.646
A0A0D0CPW8	A0A0D0CHY2	Unplaced genomic scaffold scaffold_5536, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_820, whole genome shotgun sequence.	0.645
A0A0D0CPW8	A0A0D0DAB0	Unplaced genomic scaffold scaffold_5536, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_311, whole genome shotgun sequence.	0.628
A0A0D0CPW8	A0A0D0DBR5	Unplaced genomic scaffold scaffold_5536, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_272, whole genome shotgun sequence.	0.559
A0A0D0CPW8	A0A0D0DE99	Unplaced genomic scaffold scaffold_5536, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_199, whole genome shotgun sequence.	0.631
A0A0D0CPW8	A0A0D0DH66	Unplaced genomic scaffold scaffold_5536, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_2209, whole genome shotgun sequence.	0.950
A0A0D0CPW8	A0A0D0DKT0	Unplaced genomic scaffold scaffold_5536, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_47, whole genome shotgun sequence; Belongs to the AAA ATPase family.	0.645
A0A0D0CPW8	A0A0D0E2Y2	Unplaced genomic scaffold scaffold_5536, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_240, whole genome shotgun sequence.	0.677
A0A0D0CPW8	A0A0D0E7J4	Unplaced genomic scaffold scaffold_5536, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_310, whole genome shotgun sequence.	0.674
A0A0D0CPW8	A0A0D0E8D3	Unplaced genomic scaffold scaffold_5536, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_258, whole genome shotgun sequence.	0.688
A0A0D0CPW8	A0A0D0E8I1	Unplaced genomic scaffold scaffold_5536, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_67, whole genome shotgun sequence.	0.645
A0A0D0DAB0	A0A0D0CPW8	Unplaced genomic scaffold scaffold_311, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_5536, whole genome shotgun sequence.	0.628
A0A0D0DAB0	A0A0D0DBR5	Unplaced genomic scaffold scaffold_311, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_272, whole genome shotgun sequence.	0.732
A0A0D0DAB0	A0A0D0DH66	Unplaced genomic scaffold scaffold_311, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_2209, whole genome shotgun sequence.	0.643
A0A0D0DAB0	A0A0D0E2Y2	Unplaced genomic scaffold scaffold_311, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_240, whole genome shotgun sequence.	0.439