A0A0D0DJN8 protein (Paxillus rubicundulus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D0DJN8

Unplaced genomic scaffold scaffold_576, whole genome shotgun sequence. (500 aa)

Predicted Functional Partners:

A0A0D0DJS3

0.991

A0A0D0D4U5

0.980

A0A0D0E5R7

0.979

A0A0D0E6Z7

0.975

A0A0D0DT11

0.962

A0A0D0DYT6

0.959

MDM10

0.952

A0A0D0E0I7

0.935

A0A0D0E1C7

0.920

TSF1

0.842

Your Current Organism:

Paxillus rubicundulus

NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D0D4U5	A0A0D0DJN8	A0A0D0D4U5	A0A0D0DJN8	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Unplaced genomic scaffold scaffold_576, whole genome shotgun sequence.	0.980
A0A0D0D4U5	A0A0D0DJS3	A0A0D0D4U5	A0A0D0DJS3	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Unplaced genomic scaffold scaffold_61, whole genome shotgun sequence.	0.785
A0A0D0D4U5	A0A0D0DT11	A0A0D0D4U5	A0A0D0DT11	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Unplaced genomic scaffold scaffold_145, whole genome shotgun sequence.	0.836
A0A0D0D4U5	A0A0D0DYT6	A0A0D0D4U5	A0A0D0DYT6	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Unplaced genomic scaffold scaffold_514, whole genome shotgun sequence.	0.883
A0A0D0D4U5	A0A0D0E0I7	A0A0D0D4U5	A0A0D0E0I7	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.980
A0A0D0D4U5	A0A0D0E1C7	A0A0D0D4U5	A0A0D0E1C7	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Unplaced genomic scaffold scaffold_311, whole genome shotgun sequence.	0.776
A0A0D0D4U5	A0A0D0E5R7	A0A0D0D4U5	A0A0D0E5R7	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Unplaced genomic scaffold scaffold_19, whole genome shotgun sequence.	0.837
A0A0D0D4U5	A0A0D0E6Z7	A0A0D0D4U5	A0A0D0E6Z7	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Unplaced genomic scaffold scaffold_2, whole genome shotgun sequence.	0.785
A0A0D0DJN8	A0A0D0D4U5	A0A0D0DJN8	A0A0D0D4U5	Unplaced genomic scaffold scaffold_576, whole genome shotgun sequence.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.980
A0A0D0DJN8	A0A0D0DJS3	A0A0D0DJN8	A0A0D0DJS3	Unplaced genomic scaffold scaffold_576, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_61, whole genome shotgun sequence.	0.991
A0A0D0DJN8	A0A0D0DT11	A0A0D0DJN8	A0A0D0DT11	Unplaced genomic scaffold scaffold_576, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_145, whole genome shotgun sequence.	0.962
A0A0D0DJN8	A0A0D0DYT6	A0A0D0DJN8	A0A0D0DYT6	Unplaced genomic scaffold scaffold_576, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_514, whole genome shotgun sequence.	0.959
A0A0D0DJN8	A0A0D0E0I7	A0A0D0DJN8	A0A0D0E0I7	Unplaced genomic scaffold scaffold_576, whole genome shotgun sequence.	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.935
A0A0D0DJN8	A0A0D0E1C7	A0A0D0DJN8	A0A0D0E1C7	Unplaced genomic scaffold scaffold_576, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_311, whole genome shotgun sequence.	0.920
A0A0D0DJN8	A0A0D0E5R7	A0A0D0DJN8	A0A0D0E5R7	Unplaced genomic scaffold scaffold_576, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_19, whole genome shotgun sequence.	0.979
A0A0D0DJN8	A0A0D0E6Z7	A0A0D0DJN8	A0A0D0E6Z7	Unplaced genomic scaffold scaffold_576, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_2, whole genome shotgun sequence.	0.975
A0A0D0DJN8	MDM10	A0A0D0DJN8	A0A0D0DQY5	Unplaced genomic scaffold scaffold_576, whole genome shotgun sequence.	Mitochondrial distribution and morphology protein 10; Component of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria. Components of this complex are involved in the control of mitochondrial shape and protein biogenesis and may function in phospholipid exchange. MDM10 is involved in the late assembly steps of the general translocase of the mitochondrial outer membrane (TOM complex). Functions in the TOM40-specific route of the assembly of outer membrane beta-barrel proteins, including the association of TOM40 with the recepto [...]	0.952
A0A0D0DJN8	TSF1	A0A0D0DJN8	A0A0D0DPW8	Unplaced genomic scaffold scaffold_576, whole genome shotgun sequence.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.842
A0A0D0DJS3	A0A0D0D4U5	A0A0D0DJS3	A0A0D0D4U5	Unplaced genomic scaffold scaffold_61, whole genome shotgun sequence.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.785
A0A0D0DJS3	A0A0D0DJN8	A0A0D0DJS3	A0A0D0DJN8	Unplaced genomic scaffold scaffold_61, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_576, whole genome shotgun sequence.	0.991