STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0DKH7Unplaced genomic scaffold scaffold_536, whole genome shotgun sequence. (305 aa)    
Predicted Functional Partners:
A0A0D0CAY1
Unplaced genomic scaffold scaffold_1306, whole genome shotgun sequence.
   
 0.891
A0A0D0DTS8
Unplaced genomic scaffold scaffold_115, whole genome shotgun sequence.
    
 0.890
A0A0D0E4Y5
Unplaced genomic scaffold scaffold_34, whole genome shotgun sequence.
   
 0.885
A0A0D0DUY2
Unplaced genomic scaffold scaffold_74, whole genome shotgun sequence.
    
 0.877
A0A0D0E5T7
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.830
A0A0D0DYG7
Unplaced genomic scaffold scaffold_539, whole genome shotgun sequence.
   
 0.829
A0A0D0CPL3
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.822
A0A0D0D8A5
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.822
A0A0D0D3G7
Unplaced genomic scaffold scaffold_619, whole genome shotgun sequence.
    
 0.809
A0A0D0E5F3
Unplaced genomic scaffold scaffold_428, whole genome shotgun sequence.
    
 0.809
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.