A0A0D0DMB0 protein (Paxillus rubicundulus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D0DMB0

Unplaced genomic scaffold scaffold_26, whole genome shotgun sequence. (311 aa)

Predicted Functional Partners:

A0A0D0D8M5

0.820

A0A0D0DXJ3

0.809

A0A0D0DDR7

0.779

A0A0D0DQV5

0.775

A0A0D0DRG5

0.735

A0A0D0EAT6

0.716

A0A0D0E6Z0

0.710

A0A0D0DT61

0.700

A0A0D0E2Y2

0.700

A0A0D0D6B3

0.644

Your Current Organism:

Paxillus rubicundulus

NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D0D6B3	A0A0D0DDR7	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Unplaced genomic scaffold scaffold_1611, whole genome shotgun sequence.	0.644
A0A0D0D6B3	A0A0D0DMB0	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Unplaced genomic scaffold scaffold_26, whole genome shotgun sequence.	0.644
A0A0D0D6B3	A0A0D0DQV5	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Unplaced genomic scaffold scaffold_246, whole genome shotgun sequence.	0.644
A0A0D0D6B3	A0A0D0DRG5	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Unplaced genomic scaffold scaffold_211, whole genome shotgun sequence.	0.410
A0A0D0D8M5	A0A0D0DDR7	Unplaced genomic scaffold scaffold_2493, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_1611, whole genome shotgun sequence.	0.820
A0A0D0D8M5	A0A0D0DMB0	Unplaced genomic scaffold scaffold_2493, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_26, whole genome shotgun sequence.	0.820
A0A0D0D8M5	A0A0D0DQV5	Unplaced genomic scaffold scaffold_2493, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_246, whole genome shotgun sequence.	0.820
A0A0D0D8M5	A0A0D0DXJ3	Unplaced genomic scaffold scaffold_2493, whole genome shotgun sequence.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.665
A0A0D0D8M5	A0A0D0E2Y2	Unplaced genomic scaffold scaffold_2493, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_240, whole genome shotgun sequence.	0.630
A0A0D0D8M5	A0A0D0EAT6	Unplaced genomic scaffold scaffold_2493, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_7, whole genome shotgun sequence.	0.906
A0A0D0DDR7	A0A0D0D6B3	Unplaced genomic scaffold scaffold_1611, whole genome shotgun sequence.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.644
A0A0D0DDR7	A0A0D0D8M5	Unplaced genomic scaffold scaffold_1611, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_2493, whole genome shotgun sequence.	0.820
A0A0D0DDR7	A0A0D0DMB0	Unplaced genomic scaffold scaffold_1611, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_26, whole genome shotgun sequence.	0.779
A0A0D0DDR7	A0A0D0DRG5	Unplaced genomic scaffold scaffold_1611, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_211, whole genome shotgun sequence.	0.735
A0A0D0DDR7	A0A0D0DT61	Unplaced genomic scaffold scaffold_1611, whole genome shotgun sequence.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.700
A0A0D0DDR7	A0A0D0DXJ3	Unplaced genomic scaffold scaffold_1611, whole genome shotgun sequence.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.812
A0A0D0DDR7	A0A0D0E2Y2	Unplaced genomic scaffold scaffold_1611, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_240, whole genome shotgun sequence.	0.700
A0A0D0DDR7	A0A0D0E6Z0	Unplaced genomic scaffold scaffold_1611, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_2, whole genome shotgun sequence; Belongs to the ubiquitin-conjugating enzyme family.	0.710
A0A0D0DDR7	A0A0D0EAT6	Unplaced genomic scaffold scaffold_1611, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_7, whole genome shotgun sequence.	0.716
A0A0D0DMB0	A0A0D0D6B3	Unplaced genomic scaffold scaffold_26, whole genome shotgun sequence.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.644