STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0DMX0Unplaced genomic scaffold scaffold_395, whole genome shotgun sequence. (745 aa)    
Predicted Functional Partners:
A0A0D0DX52
Unplaced genomic scaffold scaffold_21, whole genome shotgun sequence; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.812
A0A0D0ECV0
Unplaced genomic scaffold scaffold_22, whole genome shotgun sequence; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.812
A0A0D0DAW4
Unplaced genomic scaffold scaffold_1038, whole genome shotgun sequence.
    
 
 0.790
A0A0D0DYC8
Unplaced genomic scaffold scaffold_5, whole genome shotgun sequence.
   
 
 0.790
A0A0D0DBC0
Unplaced genomic scaffold scaffold_988, whole genome shotgun sequence.
   
 
 0.785
A0A0D0DT05
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
   
 
 0.785
A0A0D0DKG1
Unplaced genomic scaffold scaffold_53, whole genome shotgun sequence.
    
 
 0.704
A0A0D0E2N4
Unplaced genomic scaffold scaffold_255, whole genome shotgun sequence.
    
 
 0.704
A0A0D0DBL3
Unplaced genomic scaffold scaffold_275, whole genome shotgun sequence; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.688
A0A0D0DI80
Chitin synthase; Plays a major role in cell wall biogenesis.
    
 
 0.688
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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