STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0DP12Unplaced genomic scaffold scaffold_1185, whole genome shotgun sequence. (414 aa)    
Predicted Functional Partners:
A0A0D0E2Y2
Unplaced genomic scaffold scaffold_240, whole genome shotgun sequence.
   
 0.735
A0A0D0DCG9
Unplaced genomic scaffold scaffold_3585, whole genome shotgun sequence.
    
 0.730
A0A0D0DC06
Unplaced genomic scaffold scaffold_932, whole genome shotgun sequence.
   
 0.661
A0A0D0DJP6
Unplaced genomic scaffold scaffold_575, whole genome shotgun sequence.
   
 0.661
A0A0D0DWP4
Unplaced genomic scaffold scaffold_680, whole genome shotgun sequence; Belongs to the SKP1 family.
    
  0.644
A0A0D0DGZ1
Unplaced genomic scaffold scaffold_1155, whole genome shotgun sequence.
    
 0.642
A0A0D0DRI9
Unplaced genomic scaffold scaffold_815, whole genome shotgun sequence.
   
 0.618
A0A0D0D6B3
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
  
 
 
 0.612
A0A0D0CYK9
Unplaced genomic scaffold scaffold_1125, whole genome shotgun sequence.
    
 0.604
A0A0D0D3P4
Unplaced genomic scaffold scaffold_604, whole genome shotgun sequence.
    
  0.588
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.