A0A0D0DPL6 protein (Paxillus rubicundulus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D0DPL6

Unplaced genomic scaffold scaffold_1, whole genome shotgun sequence. (1285 aa)

Predicted Functional Partners:

A0A0D0DEL3

0.975

A0A0D0E7K6

0.945

A0A0D0E0D7

0.912

A0A0D0DMM0

0.896

A0A0D0DMM2

0.896

A0A0D0CEX1

0.893

A0A0D0CFS9

0.893

A0A0D0CH23

0.893

A0A0D0DG37

0.893

A0A0D0DZU8

0.893

Your Current Organism:

Paxillus rubicundulus

NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D0CEX1	A0A0D0DPL6	Serine/threonine-protein phosphatase.	Unplaced genomic scaffold scaffold_1, whole genome shotgun sequence.	0.893
A0A0D0CFS9	A0A0D0DPL6	Serine/threonine-protein phosphatase.	Unplaced genomic scaffold scaffold_1, whole genome shotgun sequence.	0.893
A0A0D0CH23	A0A0D0DPL6	Serine/threonine-protein phosphatase.	Unplaced genomic scaffold scaffold_1, whole genome shotgun sequence.	0.893
A0A0D0DEL3	A0A0D0DMM0	Serine/threonine-protein phosphatase.	Unplaced genomic scaffold scaffold_23, whole genome shotgun sequence.	0.817
A0A0D0DEL3	A0A0D0DMM2	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.820
A0A0D0DEL3	A0A0D0DPL6	Serine/threonine-protein phosphatase.	Unplaced genomic scaffold scaffold_1, whole genome shotgun sequence.	0.975
A0A0D0DG37	A0A0D0DMM0	Unplaced genomic scaffold scaffold_146, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_23, whole genome shotgun sequence.	0.423
A0A0D0DG37	A0A0D0DMM2	Unplaced genomic scaffold scaffold_146, whole genome shotgun sequence.	Serine/threonine-protein phosphatase.	0.423
A0A0D0DG37	A0A0D0DPL6	Unplaced genomic scaffold scaffold_146, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_1, whole genome shotgun sequence.	0.893
A0A0D0DMM0	A0A0D0DEL3	Unplaced genomic scaffold scaffold_23, whole genome shotgun sequence.	Serine/threonine-protein phosphatase.	0.817
A0A0D0DMM0	A0A0D0DG37	Unplaced genomic scaffold scaffold_23, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_146, whole genome shotgun sequence.	0.423
A0A0D0DMM0	A0A0D0DPL6	Unplaced genomic scaffold scaffold_23, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_1, whole genome shotgun sequence.	0.896
A0A0D0DMM0	A0A0D0DZU8	Unplaced genomic scaffold scaffold_23, whole genome shotgun sequence.	Serine/threonine-protein phosphatase.	0.441
A0A0D0DMM0	A0A0D0E0D7	Unplaced genomic scaffold scaffold_23, whole genome shotgun sequence.	Serine/threonine-protein phosphatase.	0.755
A0A0D0DMM0	A0A0D0E7K6	Unplaced genomic scaffold scaffold_23, whole genome shotgun sequence.	Serine/threonine-protein phosphatase.	0.810
A0A0D0DMM2	A0A0D0DEL3	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.820
A0A0D0DMM2	A0A0D0DG37	Serine/threonine-protein phosphatase.	Unplaced genomic scaffold scaffold_146, whole genome shotgun sequence.	0.423
A0A0D0DMM2	A0A0D0DPL6	Serine/threonine-protein phosphatase.	Unplaced genomic scaffold scaffold_1, whole genome shotgun sequence.	0.896
A0A0D0DMM2	A0A0D0DZU8	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.454
A0A0D0DMM2	A0A0D0E0D7	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.760