A0A0D0DPZ2 protein (Paxillus rubicundulus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D0DPZ2

Unplaced genomic scaffold scaffold_1021, whole genome shotgun sequence; Belongs to the eukaryotic ribosomal protein P1/P2 family. (112 aa)

Predicted Functional Partners:

A0A0D0DKU6

0.999

A0A0D0E5B5

0.999

A0A0D0D3H6

0.998

A0A0D0D5A2

0.998

A0A0D0D7D4

0.998

A0A0D0DDP4

0.998

A0A0D0DL29

0.998

A0A0D0DLW2

0.998

A0A0D0DNR7

0.998

A0A0D0DPG8

0.998

Your Current Organism:

Paxillus rubicundulus

NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D0D3H6	A0A0D0D5A2	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	Unplaced genomic scaffold scaffold_523, whole genome shotgun sequence.	0.999
A0A0D0D3H6	A0A0D0D7D4	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
A0A0D0D3H6	A0A0D0DDP4	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
A0A0D0D3H6	A0A0D0DKU6	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
A0A0D0D3H6	A0A0D0DL29	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	Unplaced genomic scaffold scaffold_42, whole genome shotgun sequence.	0.999
A0A0D0D3H6	A0A0D0DLW2	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	Unplaced genomic scaffold scaffold_782, whole genome shotgun sequence.	0.999
A0A0D0D3H6	A0A0D0DNR7	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	Unplaced genomic scaffold scaffold_8, whole genome shotgun sequence.	0.999
A0A0D0D3H6	A0A0D0DPG8	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	Unplaced genomic scaffold scaffold_326, whole genome shotgun sequence.	0.999
A0A0D0D3H6	A0A0D0DPZ2	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	Unplaced genomic scaffold scaffold_1021, whole genome shotgun sequence; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.998
A0A0D0D3H6	A0A0D0E5B5	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	Unplaced genomic scaffold scaffold_27, whole genome shotgun sequence; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.997
A0A0D0D5A2	A0A0D0D3H6	Unplaced genomic scaffold scaffold_523, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_617, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	0.999
A0A0D0D5A2	A0A0D0D7D4	Unplaced genomic scaffold scaffold_523, whole genome shotgun sequence.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
A0A0D0D5A2	A0A0D0DDP4	Unplaced genomic scaffold scaffold_523, whole genome shotgun sequence.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
A0A0D0D5A2	A0A0D0DKU6	Unplaced genomic scaffold scaffold_523, whole genome shotgun sequence.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
A0A0D0D5A2	A0A0D0DL29	Unplaced genomic scaffold scaffold_523, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_42, whole genome shotgun sequence.	0.999
A0A0D0D5A2	A0A0D0DLW2	Unplaced genomic scaffold scaffold_523, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_782, whole genome shotgun sequence.	0.999
A0A0D0D5A2	A0A0D0DNR7	Unplaced genomic scaffold scaffold_523, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_8, whole genome shotgun sequence.	0.999
A0A0D0D5A2	A0A0D0DPG8	Unplaced genomic scaffold scaffold_523, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_326, whole genome shotgun sequence.	0.999
A0A0D0D5A2	A0A0D0DPZ2	Unplaced genomic scaffold scaffold_523, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_1021, whole genome shotgun sequence; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.998
A0A0D0D5A2	A0A0D0E5B5	Unplaced genomic scaffold scaffold_523, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_27, whole genome shotgun sequence; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.998