STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0DT17Unplaced genomic scaffold scaffold_553, whole genome shotgun sequence. (179 aa)    
Predicted Functional Partners:
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.908
A0A0D0DTK1
Unplaced genomic scaffold scaffold_512, whole genome shotgun sequence.
   
 0.884
A0A0D0EBZ2
Unplaced genomic scaffold scaffold_69, whole genome shotgun sequence.
   
 0.884
A0A0D0DGZ7
Unplaced genomic scaffold scaffold_118, whole genome shotgun sequence.
    
 0.882
A0A0D0EBY0
Unplaced genomic scaffold scaffold_72, whole genome shotgun sequence.
    
 0.882
LSM1
U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.
   
 0.876
A0A0D0E4M5
Unplaced genomic scaffold scaffold_40, whole genome shotgun sequence.
   
 0.876
A0A0D0E330
Unplaced genomic scaffold scaffold_233, whole genome shotgun sequence.
    
 0.875
A0A0D0DY09
Unplaced genomic scaffold scaffold_245, whole genome shotgun sequence.
   
 0.872
A0A0D0D580
Unplaced genomic scaffold scaffold_769, whole genome shotgun sequence.
   
 0.870
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.