STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0DU97Unplaced genomic scaffold scaffold_97, whole genome shotgun sequence. (814 aa)    
Predicted Functional Partners:
A0A0D0E6Z0
Unplaced genomic scaffold scaffold_2, whole genome shotgun sequence; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.881
A0A0D0EAI3
Unplaced genomic scaffold scaffold_154, whole genome shotgun sequence; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.840
A0A0D0DLF4
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...]
   
 
 0.817
A0A0D0DYQ0
Unplaced genomic scaffold scaffold_222, whole genome shotgun sequence.
    
 0.791
A0A0D0ECY3
Unplaced genomic scaffold scaffold_18, whole genome shotgun sequence.
    
 0.791
A0A0D0DXD7
Unplaced genomic scaffold scaffold_628, whole genome shotgun sequence.
    
 0.782
A0A0D0DH44
Unplaced genomic scaffold scaffold_115, whole genome shotgun sequence.
    
 0.713
A0A0D0DJ02
Unplaced genomic scaffold scaffold_949, whole genome shotgun sequence.
    
 0.713
A0A0D0DQF7
Unplaced genomic scaffold scaffold_949, whole genome shotgun sequence; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.713
A0A0D0E278
Serine/threonine-protein kinase.
    
 
 0.697
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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