STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0DVS6Unplaced genomic scaffold scaffold_341, whole genome shotgun sequence. (251 aa)    
Predicted Functional Partners:
A0A0D0CWK5
Unplaced genomic scaffold scaffold_1327, whole genome shotgun sequence.
    
 
 0.836
A0A0D0EA40
Poly [ADP-ribose] polymerase.
   
 
 0.688
A0A0D0D2Y5
DNA ligase.
   
 
 0.625
A0A0D0EC34
Unplaced genomic scaffold scaffold_62, whole genome shotgun sequence.
   
    0.580
A0A0D0DXU3
Unplaced genomic scaffold scaffold_12, whole genome shotgun sequence; Belongs to the eIF-2B alpha/beta/delta subunits family.
   
    0.577
A0A0D0E430
Unplaced genomic scaffold scaffold_49, whole genome shotgun sequence.
   
  
 0.519
A0A0D0ECQ0
Unplaced genomic scaffold scaffold_29, whole genome shotgun sequence.
   
  
 0.519
A0A0D0DL26
Unplaced genomic scaffold scaffold_42, whole genome shotgun sequence.
    
 
 0.493
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
   
 
 0.492
A0A0D0EAT0
Unplaced genomic scaffold scaffold_7, whole genome shotgun sequence.
    
 
 0.492
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.