STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0DXI1Unplaced genomic scaffold scaffold_15, whole genome shotgun sequence. (394 aa)    
Predicted Functional Partners:
A0A0D0E4I4
Unplaced genomic scaffold scaffold_42, whole genome shotgun sequence; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.973
A0A0D0EBD5
Unplaced genomic scaffold scaffold_114, whole genome shotgun sequence.
   
 0.973
A0A0D0DW54
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.921
SEY1
Protein SEY1; Cooperates with the reticulon proteins and tubule-shaping DP1 family proteins to generate and maintain the structure of the tubular endoplasmic reticulum network. Has GTPase activity, which is required for its function in ER organization; Belongs to the TRAFAC class dynamin-like GTPase superfamily. GB1/RHD3-type GTPase family. RHD3 subfamily.
    
   0.889
A0A0D0DRN1
Unplaced genomic scaffold scaffold_808, whole genome shotgun sequence.
   
 0.831
A0A0D0ED64
Unplaced genomic scaffold scaffold_9, whole genome shotgun sequence.
   
 
 0.804
A0A0D0E4B4
Unplaced genomic scaffold scaffold_45, whole genome shotgun sequence.
   
 0.793
A0A0D0DT05
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
   
 
 0.785
A0A0D0DL61
Unplaced genomic scaffold scaffold_1574, whole genome shotgun sequence.
   
 
 0.779
A0A0D0DM44
Unplaced genomic scaffold scaffold_728, whole genome shotgun sequence.
   
 
 0.779
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.