STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0E1Q0Unplaced genomic scaffold scaffold_295, whole genome shotgun sequence. (239 aa)    
Predicted Functional Partners:
A0A0D0EB82
Unplaced genomic scaffold scaffold_1, whole genome shotgun sequence.
   
 0.960
A0A0D0E0Q8
Unplaced genomic scaffold scaffold_360, whole genome shotgun sequence.
    
 0.933
A0A0D0E330
Unplaced genomic scaffold scaffold_233, whole genome shotgun sequence.
    
 0.926
A0A0D0EA24
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.922
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
   
  0.914
A0A0D0DXP9
Small nuclear ribonucleoprotein Sm D2.
   
  0.912
A0A0D0DKR6
U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
  0.908
A0A0D0E3R0
Unplaced genomic scaffold scaffold_211, whole genome shotgun sequence.
    
  0.908
A0A0D0E7K5
Small nuclear ribonucleoprotein Sm D3.
   
 0.908
A0A0D0E499
Unplaced genomic scaffold scaffold_45, whole genome shotgun sequence; Belongs to the DEAD box helicase family.
   
 0.907
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.