STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0E1S0Unplaced genomic scaffold scaffold_97, whole genome shotgun sequence. (906 aa)    
Predicted Functional Partners:
A0A0D0DJS4
Unplaced genomic scaffold scaffold_893, whole genome shotgun sequence.
   
 0.932
A0A0D0CV24
Unplaced genomic scaffold scaffold_724, whole genome shotgun sequence.
    
 0.925
A0A0D0DL08
Unplaced genomic scaffold scaffold_806, whole genome shotgun sequence.
    
 0.925
A0A0D0DVL9
Histone H2A; Belongs to the histone H2A family.
   
 0.922
A0A0D0DTM8
DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.
   
 0.908
A0A0D0D8V6
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 0.905
A0A0D0D679
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 
  0.899
A0A0D0E045
Unplaced genomic scaffold scaffold_401, whole genome shotgun sequence.
   
 0.896
A0A0D0EBW1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.895
A0A0D0ED44
Unplaced genomic scaffold scaffold_11, whole genome shotgun sequence.
    
 0.895
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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