A0A0D0E309 protein (Paxillus rubicundulus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D0E309

Unplaced genomic scaffold scaffold_70, whole genome shotgun sequence. (489 aa)

Predicted Functional Partners:

A0A0D0EDF1

0.934

A0A0D0DXW6

0.927

A0A0D0D8R5

0.901

A0A0D0DS83

0.876

A0A0D0DBJ7

0.861

A0A0D0DP90

0.852

A0A0D0EB45

0.804

A0A0D0DQF4

0.799

A0A0D0EB72

0.799

A0A0D0DVX4

0.790

Your Current Organism:

Paxillus rubicundulus

NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D0D8R5	A0A0D0DBJ7	Unplaced genomic scaffold scaffold_4876, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_276, whole genome shotgun sequence.	0.730
A0A0D0D8R5	A0A0D0DP90	Unplaced genomic scaffold scaffold_4876, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_3, whole genome shotgun sequence.	0.735
A0A0D0D8R5	A0A0D0DS83	Unplaced genomic scaffold scaffold_4876, whole genome shotgun sequence.	Phosphodiesterase.	0.725
A0A0D0D8R5	A0A0D0DVX4	Unplaced genomic scaffold scaffold_4876, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_44, whole genome shotgun sequence.	0.658
A0A0D0D8R5	A0A0D0DXW6	Unplaced genomic scaffold scaffold_4876, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_11, whole genome shotgun sequence.	0.963
A0A0D0D8R5	A0A0D0E309	Unplaced genomic scaffold scaffold_4876, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_70, whole genome shotgun sequence.	0.901
A0A0D0D8R5	A0A0D0EB45	Unplaced genomic scaffold scaffold_4876, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_2, whole genome shotgun sequence.	0.915
A0A0D0DBJ7	A0A0D0D8R5	Unplaced genomic scaffold scaffold_276, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_4876, whole genome shotgun sequence.	0.730
A0A0D0DBJ7	A0A0D0DQF4	Unplaced genomic scaffold scaffold_276, whole genome shotgun sequence.	Ubiquitin carboxyl-terminal hydrolase.	0.839
A0A0D0DBJ7	A0A0D0DS83	Unplaced genomic scaffold scaffold_276, whole genome shotgun sequence.	Phosphodiesterase.	0.958
A0A0D0DBJ7	A0A0D0DXW6	Unplaced genomic scaffold scaffold_276, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_11, whole genome shotgun sequence.	0.737
A0A0D0DBJ7	A0A0D0E309	Unplaced genomic scaffold scaffold_276, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_70, whole genome shotgun sequence.	0.861
A0A0D0DBJ7	A0A0D0EB72	Unplaced genomic scaffold scaffold_276, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_1, whole genome shotgun sequence.	0.742
A0A0D0DBJ7	A0A0D0EDF1	Unplaced genomic scaffold scaffold_276, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_1, whole genome shotgun sequence.	0.777
A0A0D0DP90	A0A0D0D8R5	Unplaced genomic scaffold scaffold_3, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_4876, whole genome shotgun sequence.	0.735
A0A0D0DP90	A0A0D0DQF4	Unplaced genomic scaffold scaffold_3, whole genome shotgun sequence.	Ubiquitin carboxyl-terminal hydrolase.	0.590
A0A0D0DP90	A0A0D0DS83	Unplaced genomic scaffold scaffold_3, whole genome shotgun sequence.	Phosphodiesterase.	0.958
A0A0D0DP90	A0A0D0DXW6	Unplaced genomic scaffold scaffold_3, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_11, whole genome shotgun sequence.	0.808
A0A0D0DP90	A0A0D0E309	Unplaced genomic scaffold scaffold_3, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_70, whole genome shotgun sequence.	0.852
A0A0D0DP90	A0A0D0EB72	Unplaced genomic scaffold scaffold_3, whole genome shotgun sequence.	Unplaced genomic scaffold scaffold_1, whole genome shotgun sequence.	0.590