STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0E4L4Unplaced genomic scaffold scaffold_479, whole genome shotgun sequence. (347 aa)    
Predicted Functional Partners:
A0A0D0DKR0
Unplaced genomic scaffold scaffold_820, whole genome shotgun sequence.
   
 0.938
A0A0D0DHK9
Unplaced genomic scaffold scaffold_2126, whole genome shotgun sequence.
   
 0.922
A0A0D0DSG4
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.919
A0A0D0DDX3
Unplaced genomic scaffold scaffold_212, whole genome shotgun sequence.
   
 0.917
A0A0D0DDY5
Unplaced genomic scaffold scaffold_794, whole genome shotgun sequence.
    
 0.913
A0A0D0E6M2
Unplaced genomic scaffold scaffold_6, whole genome shotgun sequence.
   
 0.913
A0A0D0DRK3
Enhancer of polycomb-like protein.
    
 0.908
A0A0D0E0A5
Unplaced genomic scaffold scaffold_152, whole genome shotgun sequence.
    
 0.908
A0A0D0DS27
Unplaced genomic scaffold scaffold_185, whole genome shotgun sequence.
   
 0.907
A0A0D0E275
Unplaced genomic scaffold scaffold_87, whole genome shotgun sequence; Belongs to the PI3/PI4-kinase family.
   
 0.906
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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