STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0E5E1Unplaced genomic scaffold scaffold_26, whole genome shotgun sequence. (530 aa)    
Predicted Functional Partners:
A0A0D0C4M7
Unplaced genomic scaffold scaffold_1897, whole genome shotgun sequence.
    
 0.995
A0A0D0EAD4
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
   
 0.963
A0A0D0EB05
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
    
 0.943
A0A0D0DEF0
Unplaced genomic scaffold scaffold_195, whole genome shotgun sequence.
   
 0.928
A0A0D0DM70
Unplaced genomic scaffold scaffold_777, whole genome shotgun sequence.
   
 0.928
A0A0D0E9B4
Unplaced genomic scaffold scaffold_43, whole genome shotgun sequence.
    
 
 0.922
A0A0D0DHH4
AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.
   
 0.915
A0A0D0E9E6
AP-1 complex subunit gamma.
   
 0.911
A0A0D0DW32
Unplaced genomic scaffold scaffold_321, whole genome shotgun sequence.
     
0.910
A0A0D0E719
Unplaced genomic scaffold scaffold_117, whole genome shotgun sequence.
   
 0.908
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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