STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0E5E9Unplaced genomic scaffold scaffold_428, whole genome shotgun sequence. (528 aa)    
Predicted Functional Partners:
A0A0D0E1Z3
Unplaced genomic scaffold scaffold_652, whole genome shotgun sequence.
   
 0.963
PAN3
PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...]
    
 0.929
A0A0D0DXC2
Unplaced genomic scaffold scaffold_631, whole genome shotgun sequence.
    
0.928
A0A0D0D8V6
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 0.910
A0A0D0DS91
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.879
A0A0D0E3V2
Unplaced genomic scaffold scaffold_204, whole genome shotgun sequence.
    
 0.879
A0A0D0E6P6
Unplaced genomic scaffold scaffold_364, whole genome shotgun sequence.
    
 0.879
A0A0D0DYU7
Unplaced genomic scaffold scaffold_1, whole genome shotgun sequence.
   
 
 0.759
A0A0D0E3M1
Unplaced genomic scaffold scaffold_57, whole genome shotgun sequence.
   
 
 0.745
A0A0D0DVP6
Unplaced genomic scaffold scaffold_346, whole genome shotgun sequence.
   
 
  0.740
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.