STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0E6D2Ubiquitin carboxyl-terminal hydrolase. (678 aa)    
Predicted Functional Partners:
A0A0D0E4L3
Unplaced genomic scaffold scaffold_41, whole genome shotgun sequence.
    
 0.757
A0A0D0EC06
Unplaced genomic scaffold scaffold_67, whole genome shotgun sequence.
     
 0.753
A0A0D0E166
Unplaced genomic scaffold scaffold_115, whole genome shotgun sequence.
    
 0.719
A0A0D0DX14
Unplaced genomic scaffold scaffold_649, whole genome shotgun sequence.
    
 0.698
A0A0D0DQD9
Ubiquitin carboxyl-terminal hydrolase.
     
0.657
A0A0D0E6U1
Unplaced genomic scaffold scaffold_359, whole genome shotgun sequence.
      
 0.508
A0A0D0DRR4
Unplaced genomic scaffold scaffold_682, whole genome shotgun sequence; Belongs to the helicase family. Dicer subfamily.
     
 0.488
A0A0D0DVY2
Unplaced genomic scaffold scaffold_43, whole genome shotgun sequence.
     
 0.488
A0A0D0DWI2
Unplaced genomic scaffold scaffold_29, whole genome shotgun sequence; Belongs to the helicase family. Dicer subfamily.
     
 0.488
A0A0D0E965
Unplaced genomic scaffold scaffold_218, whole genome shotgun sequence; Belongs to the helicase family. Dicer subfamily.
     
 0.488
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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