STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0E8R4Unplaced genomic scaffold scaffold_60, whole genome shotgun sequence. (407 aa)    
Predicted Functional Partners:
A0A0D0E4F7
Unplaced genomic scaffold scaffold_184, whole genome shotgun sequence.
    
 0.976
A0A0D0DY25
Unplaced genomic scaffold scaffold_570, whole genome shotgun sequence.
    
 0.959
A0A0D0DSG4
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.913
A0A0D0CVB6
Unplaced genomic scaffold scaffold_1472, whole genome shotgun sequence.
    
 0.905
A0A0D0CLL7
Unplaced genomic scaffold scaffold_765, whole genome shotgun sequence.
    
 0.902
A0A0D0DHK9
Unplaced genomic scaffold scaffold_2126, whole genome shotgun sequence.
   
 0.902
A0A0D0E9V6
Unplaced genomic scaffold scaffold_28, whole genome shotgun sequence.
    
 0.899
A0A0D0DX23
Unplaced genomic scaffold scaffold_648, whole genome shotgun sequence.
   
 0.897
A0A0D0DDX3
Unplaced genomic scaffold scaffold_212, whole genome shotgun sequence.
    
 0.896
A0A0D0DS27
Unplaced genomic scaffold scaffold_185, whole genome shotgun sequence.
    
 0.894
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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