STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0EA15Unplaced genomic scaffold scaffold_173, whole genome shotgun sequence. (443 aa)    
Predicted Functional Partners:
A0A0D0DN55
Unplaced genomic scaffold scaffold_15, whole genome shotgun sequence.
   
 0.890
A0A0D0E217
Unplaced genomic scaffold scaffold_647, whole genome shotgun sequence.
   
 0.890
A0A0D0DEM2
Unplaced genomic scaffold scaffold_189, whole genome shotgun sequence.
    
 0.884
A0A0D0E8G9
Unplaced genomic scaffold scaffold_68, whole genome shotgun sequence.
    
 0.879
A0A0D0D607
Unplaced genomic scaffold scaffold_1563, whole genome shotgun sequence.
   
 0.878
A0A0D0DZX2
Unplaced genomic scaffold scaffold_170, whole genome shotgun sequence.
    
  0.871
A0A0D0DID2
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
  0.869
A0A0D0E288
Unplaced genomic scaffold scaffold_85, whole genome shotgun sequence.
    
  0.869
A0A0D0E3B2
Unplaced genomic scaffold scaffold_565, whole genome shotgun sequence.
   
 0.868
A0A0D0DRZ0
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
 0.856
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.