Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ALC04875.1 | ALC04877.1 | CDES_02065 | CDES_02075 | Hypothetical protein. | Succinate dehydrogenase/fumarate reductase iron-sulfur subunit. | 0.998 |
| ALC04875.1 | cat1 | CDES_02065 | CDES_11675 | Hypothetical protein. | Succinyl-CoA:coenzyme A transferase. | 0.900 |
| ALC04875.1 | sdhA | CDES_02065 | CDES_02070 | Hypothetical protein. | Succinate dehydrogenase flavoprotein subunit. | 0.999 |
| ALC04875.1 | sucC | CDES_02065 | CDES_11620 | Hypothetical protein. | Succinyl-CoA ligase [ADP-forming] subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.912 |
| ALC04875.1 | sucD | CDES_02065 | CDES_11615 | Hypothetical protein. | Succinyl-CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.912 |
| ALC04877.1 | ALC04875.1 | CDES_02075 | CDES_02065 | Succinate dehydrogenase/fumarate reductase iron-sulfur subunit. | Hypothetical protein. | 0.998 |
| ALC04877.1 | aceF | CDES_02075 | CDES_10005 | Succinate dehydrogenase/fumarate reductase iron-sulfur subunit. | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex. | 0.600 |
| ALC04877.1 | cat1 | CDES_02075 | CDES_11675 | Succinate dehydrogenase/fumarate reductase iron-sulfur subunit. | Succinyl-CoA:coenzyme A transferase. | 0.916 |
| ALC04877.1 | odhA | CDES_02075 | CDES_05460 | Succinate dehydrogenase/fumarate reductase iron-sulfur subunit. | 2-oxoglutarate dehydrogenase E1/E2 component. | 0.966 |
| ALC04877.1 | sdhA | CDES_02075 | CDES_02070 | Succinate dehydrogenase/fumarate reductase iron-sulfur subunit. | Succinate dehydrogenase flavoprotein subunit. | 0.999 |
| ALC04877.1 | sucC | CDES_02075 | CDES_11620 | Succinate dehydrogenase/fumarate reductase iron-sulfur subunit. | Succinyl-CoA ligase [ADP-forming] subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.980 |
| ALC04877.1 | sucD | CDES_02075 | CDES_11615 | Succinate dehydrogenase/fumarate reductase iron-sulfur subunit. | Succinyl-CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.983 |
| ALC05573.1 | aceF | CDES_05705 | CDES_10005 | Hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family. | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex. | 0.815 |
| ALC05573.1 | cat1 | CDES_05705 | CDES_11675 | Hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family. | Succinyl-CoA:coenzyme A transferase. | 0.911 |
| ALC05573.1 | glcB | CDES_05705 | CDES_10585 | Hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family. | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.923 |
| ALC05573.1 | prpB1 | CDES_05705 | CDES_03530 | Hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family. | Putative methylisocitrate lyase 1; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. | 0.827 |
| ALC05573.1 | sucC | CDES_05705 | CDES_11620 | Hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family. | Succinyl-CoA ligase [ADP-forming] subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.847 |
| ALC05573.1 | sucD | CDES_05705 | CDES_11615 | Hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family. | Succinyl-CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.855 |
| aceF | ALC04877.1 | CDES_10005 | CDES_02075 | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex. | Succinate dehydrogenase/fumarate reductase iron-sulfur subunit. | 0.600 |
| aceF | ALC05573.1 | CDES_10005 | CDES_05705 | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex. | Hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family. | 0.815 |
page 1 of 4