STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_02079COG4177 ABC-type branched-chain amino acid transport system, permease component. (443 aa)    
Predicted Functional Partners:
C448_02074
COG0559 Branched-chain amino acid ABC-type transport system, permease components.
 
 0.999
C448_02084
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 0.999
C448_02089
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 0.997
C448_02094
Extracellular ligand-binding receptor; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
 
 0.997
C448_04055
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 0.992
C448_05126
COG2340 Uncharacterized protein with SCP/PR1 domains.
   
   0.853
C448_03251
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
    
  0.444
C448_10182
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
    
  0.444
C448_11076
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
    
  0.444
C448_12861
ABC transporter ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
   
  0.443
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.