STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_02838COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine gamma-synthase, cystathionine gamma-lyase, cystathionine beta-lyase. (404 aa)    
Predicted Functional Partners:
C448_05673
COG0031 Cysteine synthase.
 0.957
C448_04564
COG1045 Serine acetyltransferase.
  
 
 0.954
C448_14959
COG0031 Cysteine synthase.
 
 0.950
C448_08569
COG0527 Aspartokinases; Belongs to the aspartokinase family.
  
 
 0.945
katG
Catalase/hydroperoxidase HPI(I); Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
  
 0.914
C448_15289
COG0685 5,10-methylenetetrahydrofolate reductase.
  
 0.914
C448_05076
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; COG0620 Methionine synthase II (cobalamin-independent).
  
 
 0.868
C448_05081
COG0620 Methionine synthase II (cobalamin-independent).
  
 
 0.868
C448_13966
COG3620 Predicted transcriptional regulator with C-terminal CBS domains.
  
 
 0.863
C448_02246
COG0460 Homoserine dehydrogenase.
  
 
 0.862
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.