STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_04145COG0633 Ferredoxin. (194 aa)    
Predicted Functional Partners:
C448_14208
NADH-ubiquinone oxidoreductase chain 49kDa; COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
  
 
 0.999
C448_14378
COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
  
 
 0.999
C448_03596
COG0155 Sulfite reductase, beta subunit (hemoprotein).
 
 
 0.782
C448_08914
SUF system FeS assembly protein, NifU family; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 0.725
C448_14368
COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I).
  
 
 0.715
ligA
NAD-dependent DNA ligase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
      0.689
C448_05086
COG2124 Cytochrome P450.
  
 0.687
C448_05256
COG2124 Cytochrome P450.
  
 0.687
C448_06403
COG2124 Cytochrome P450.
  
 0.687
C448_11111
COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M).
    
 
 0.686
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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