STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_04564COG1045 Serine acetyltransferase. (188 aa)    
Predicted Functional Partners:
cysS
COG0215 Cysteinyl-tRNA synthetase.
 
 
 0.998
C448_14959
COG0031 Cysteine synthase.
 
 0.991
C448_05673
COG0031 Cysteine synthase.
 
 0.990
C448_11561
phenylacetyl-CoA ligase; COG1541 Coenzyme F390 synthetase.
    
 0.960
C448_02838
COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine gamma-synthase, cystathionine gamma-lyase, cystathionine beta-lyase.
  
 
 0.954
C448_13101
ATP-binding protein Mrp 1; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.937
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. Also exhibits THF-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.925
C448_08569
COG0527 Aspartokinases; Belongs to the aspartokinase family.
    
 0.894
C448_08914
SUF system FeS assembly protein, NifU family; COG0822 NifU homolog involved in Fe-S cluster formation.
  
  
 0.893
C448_12056
Glutamine--scyllo-inositol transaminase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.876
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.