STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_06128COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase. (313 aa)    
Predicted Functional Partners:
C448_06508
COG0578 Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.756
C448_10452
COG0578 Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.756
mfnA
L-tyrosine decarboxylase; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily.
  
 0.673
C448_06168
Phosphoesterase PA-phosphatase-like protein; COG0671 Membrane-associated phospholipid phosphatase.
   
 0.670
C448_06133
Isopentenyl-diphosphate delta-isomerase; COG1443 Isopentenyldiphosphate isomerase.
   
   0.668
C448_05638
Endonuclease/exonuclease/phosphatase; COG3568 Metal-dependent hydrolase.
  
 
  0.636
C448_06123
PHP domain protein; COG0613 Predicted metal-dependent phosphoesterases (PHP family).
 
     0.622
C448_04674
Phospholipase D/transphosphatidylase; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.
   
 
 0.604
C448_15119
Hypothetical protein.
    
  0.576
C448_05176
Isopentenyl-diphosphate delta isomerase; COG1524 Uncharacterized proteins of the AP superfamily.
    
  0.559
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.