STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctaBProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (474 aa)    
Predicted Functional Partners:
C448_06870
COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2.
 
 
 0.996
C448_15029
COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
 
 
 0.990
C448_13416
COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
 0.989
C448_15014
COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
 0.989
C448_13306
COG1290 Cytochrome b subunit of the bc complex.
 
 
 0.808
C448_06860
Putative selenoprotein; COG3526 Uncharacterized protein conserved in bacteria.
       0.785
C448_14208
NADH-ubiquinone oxidoreductase chain 49kDa; COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
   
  
 0.694
C448_14378
COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
   
  
 0.694
C448_15209
COG1612 Uncharacterized protein required for cytochrome oxidase assembly.
  
  
0.685
C448_06850
COG0842 ABC-type multidrug transport system, permease component.
       0.537
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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