STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_06987ISH10-type transposase ISHwa11; COG3436 Transposase and inactivated derivatives. (334 aa)    
Predicted Functional Partners:
C448_12656
ISH5-type transposase ISHwa5; COG3385 FOG: Transposase and inactivated derivatives.
  
     0.516
C448_05653
COG3385 FOG: Transposase and inactivated derivatives.
  
     0.512
C448_01224
Transposase IS4 family protein; COG3385 FOG: Transposase and inactivated derivatives.
  
     0.455
C448_04754
Transposase, IS4; COG5659 FOG: Transposase.
  
     0.430
C448_13141
Transposase family protein.
  
     0.417
rnp1
Ribonuclease P protein component 1; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family.
  
     0.407
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.