STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_07844Type I phosphodiesterase/nucleotide pyrophosphatase. (532 aa)    
Predicted Functional Partners:
C448_07849
COG0438 Glycosyltransferase.
 
     0.802
C448_07854
COG0438 Glycosyltransferase.
 
     0.604
C448_07834
Sulfatase; COG3119 Arylsulfatase A and related enzymes.
 
     0.559
C448_07839
Hypothetical protein.
       0.539
C448_09437
Sulfatase; COG3119 Arylsulfatase A and related enzymes.
  
     0.466
C448_07829
Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
 
     0.441
C448_04160
Sulfatase; COG3119 Arylsulfatase A and related enzymes.
  
     0.420
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.