STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_08249TRAP transporter solute receptor, TAXI family protein; COG2358 TRAP-type uncharacterized transport system, periplasmic component. (402 aa)    
Predicted Functional Partners:
C448_08259
Hypothetical protein; COG4666 TRAP-type uncharacterized transport system, fused permease components.
  
 0.943
C448_08254
Hypothetical protein.
 
    0.842
C448_09887
COG3314 Uncharacterized protein conserved in bacteria.
  
     0.478
C448_07804
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
  
 0.471
C448_08244
COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1.
       0.469
C448_07789
Glutamine ABC transporter ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component.
 
     0.410
C448_07784
COG0765 ABC-type amino acid transport system, permease component.
  
     0.405
C448_07799
ABC transporter integral membrane protein; COG0765 ABC-type amino acid transport system, permease component.
  
     0.402
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.