STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_08534Formate dehydrogenase subunit alpha; COG3383 Uncharacterized anaerobic dehydrogenase; overlaps another CDS with the same product name. (317 aa)    
Predicted Functional Partners:
C448_08539
Formate dehydrogenase subunit alpha; COG3383 Uncharacterized anaerobic dehydrogenase; overlaps another CDS with the same product name.
  
  0.991
C448_08529
Putative NADH dehydrogenase I, F subunit; COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
 
  
 0.976
C448_10844
Formate dehydrogenase subunit alpha; COG3383 Uncharacterized anaerobic dehydrogenase.
  
  0.960
C448_03901
Molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; COG0303 Molybdopterin biosynthesis enzyme.
  
 
 0.812
C448_08544
Hypothetical protein.
       0.773
C448_14368
COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I).
 
 
 0.754
C448_12801
COG0281 Malic enzyme.
  
  
 0.749
C448_15199
COG0281 Malic enzyme.
     
 0.716
C448_15456
biotin--acetyl-CoA-carboxylase ligase; COG1654 Biotin operon repressor.
     
 0.712
C448_15149
Oxidoreductase (glycolate oxidase iron-sulfur subunit); COG0277 FAD/FMN-containing dehydrogenases.
    
 0.711
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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