STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_08564COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; bis(5'-nucleosyl)-tetraphosphatase (symmetrical). (219 aa)    
Predicted Functional Partners:
C448_03616
mRNA cleavage and polyadenylation specificity factor-like protein; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.
   
 0.957
C448_08604
GTP-binding protein; COG1100 GTPase SAR1 and related small G proteins.
   
 0.915
C448_13996
COG1093 Translation initiation factor 2, alpha subunit (eIF-2alpha).
   
 0.912
C448_03058
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
    
 0.862
C448_02913
Hypothetical protein; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.
    
 
 0.852
C448_03251
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
    
 0.800
C448_10182
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
    
 0.800
C448_11076
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
    
 0.800
rpl40e
COG1552 Ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 
 0.794
purO
IMP cyclohydrolase; Catalyzes the cyclization of 5-formylamidoimidazole-4- carboxamide ribonucleotide to IMP.
       0.733
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.