STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_09367COG1175 ABC-type sugar transport systems, permease components. (267 aa)    
Predicted Functional Partners:
C448_09362
COG0395 ABC-type sugar transport system, permease component.
 
 0.969
C448_12216
Putative sugar ABC transporter periplasmic substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
 0.923
C448_12226
COG0395 ABC-type sugar transport system, permease component.
 
 0.923
C448_05978
COG0395 ABC-type sugar transport system, permease component.
 
 0.922
C448_05968
Sugar ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
 0.838
C448_07904
Binding-protein-dependent transport systems inner membrane component.
  
 0.820
C448_04856
ABC transporter ATP-binding protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
    
 0.744
C448_12231
Putative sugar ABC transporter ATP-binding protein; COG3839 ABC-type sugar transport systems, ATPase components.
 
  
 0.696
C448_05973
COG1175 ABC-type sugar transport systems, permease components.
  
     0.679
C448_12221
COG1175 ABC-type sugar transport systems, permease components.
  
     0.676
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.