STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_12566Hypothetical protein; COG4190 Predicted transcriptional regulator. (159 aa)    
Predicted Functional Partners:
C448_12561
Hypothetical protein.
       0.778
C448_12571
Sugar kinase, FGGY family protein; COG1070 Sugar (pentulose and hexulose) kinases; Belongs to the FGGY kinase family.
       0.608
C448_00165
Restriction modification system DNA specificity subunit; COG0732 Restriction endonuclease S subunits.
   
    0.472
C448_00160
Hypothetical protein; COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases.
   
    0.408
C448_01504
COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases.
   
    0.408
C448_01509
Restriction endonuclease, type I, EcoRI, R subunit/Type III.
   
    0.408
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.