STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_13671Cupin 2 barrel domain-containing protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain. (111 aa)    
Predicted Functional Partners:
C448_05001
Phytanoyl-CoA dioxygenase.
    
 0.657
C448_09335
COG0077 Prephenate dehydratase.
  
 
 0.652
C448_05196
COG0015 Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 0.645
C448_13666
Hypothetical protein.
       0.615
C448_13676
Hypothetical protein.
       0.599
C448_14480
Hypothetical protein.
  
 
  0.580
C448_05623
Amidohydrolase; COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
  0.475
C448_11696
Hypothetical protein.
    
 
 0.417
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.